Author

Stephen Nayfach

Primary ORCID profile (0000-0003-4625-4164 · 15 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Stephen NayfachiD15 papers · Lawrence Berkeley National Laboratory

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Katherine S Pollard· 2 shared Beltran Rodriguez-Mueller· 1 shared Nandita Garud· 1 shared

Activity by Year

2014-2016 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersGenomics

Katherine S Pollard

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2 papers

Recent·Most cited

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

Stephen Nayfach, Beltran Rodriguez-Mueller, Nandita Garud, Katherine S Pollard

The paper introduces MIDAS, a metagenomics pipeline for strain profiling, revealing vertical transmission patterns and geographic biogeography of bacteria.

bioRxiv · Aug 2, 2016Genomics

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

Stephen Nayfach, Katherine S Pollard

The paper estimates average genome size in human microbiome samples to better understand gene family abundance and functional ecology.

bioRxiv · Sep 11, 2014Bioinformatics