scMARK an 'MNIST' like benchmark to evaluate and optimize models for unifying scRNA data
Swechha, Dylan Mendonca, Octavian Focsa, J. Javier Díaz-Mejía, Sam Cooper
The paper introduces scMARK, a benchmark dataset and framework to evaluate scRNA integration tools, finding that scVI is the only tool tested capable of integrating scRNA studies at scale.
bioRxiv · Dec 8, 2021 · PreprintBioinformatics