Fine-tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides
V. Mlynsky, P. Kuhrova, T. Kuhr, M. Otyepka, G. Bussi, P. Banas, J. Sponer
The paper improves RNA force field simulations by adding two terms, gHBfix and tHBfix, to better model terminal nucleotide interactions and enhance accuracy for RNA tetranucleotides.
bioRxiv · Mar 8, 2020Biophysics