The user's guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of Salmonella, the phylogeny of ancient and modern Yersinia pestis genomes, and the core genomic diversity of all Escherichia.
Z. Zhou, N.-F. Alikhan, K. Mohamed, Y. Fan, the Agama Study Group, M. Achtman
The paper introduces EnteroBase, a software environment for comparative genomics, and demonstrates its use in analyzing bacterial population structures through three case studies.
bioRxiv · Nov 25, 2019Microbiology