Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance
Ryan P. Connor, Migun Shakya, David A. Yarmosh, Wolfgang Maier, Ross Martin, Rebecca Bradford, James Rodney Brister, Patrick Chain, Courtney A. Copeland, Julia di Iulio, Bin Hu, Philip J. Ebert, Jonathan Gunti, Yumi Jin, Kenneth Katz, , Kim D. Pruitt
This study evaluates the impact of sequencing technologies and bioinformatic protocols on SARS-CoV-2 variant calling and introduces standardized parameters to improve pipeline consistency.
Viruses · Mar 11, 2024Peer-reviewedBioinformatics