Author

Chien‐Chi Lo

Los Alamos National LaboratoryORCID 0000-0003-3470-1078Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:metagenomics· 2 Research Focus:genome assembly· 1 Organism:human· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Patrick ChainiD· 3 shared David A. YarmoshiD· 2 shared Migun ShakyaiD· 2 shared Po‐E LiiD· 2 shared Alan ShteymaniD· 1 shared Andrew H. Wiser· 1 shared Andrey Kochergin· 1 shared Bin HuiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Patrick ChainORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsVirusesPeer-reviewedMar 11, 2024

Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance

Ryan P. Connor, Migun Shakya, David A. Yarmosh…·Kim D. Pruitt

This study evaluates the impact of sequencing technologies and bioinformatic protocols on SARS-CoV-2 variant calling and introduces standardized parameters to improve pipeline consistency.

14 citations

viruswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 20, 2020

PanGIA: A Metagenomics Analytical Framework for RoutineBiosurveillance and Clinical Pathogen Detection

Po‐E Li, Joseph A. Russell, David A. Yarmosh…·Patrick Chain

PanGIA is a metagenomics analysis platform designed for pathogen detection and microbial community profiling, offering improved accuracy and usability for non-expert users.

5 citations

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintOct 5, 2017

Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions.

Maximilian Oliver Press, Andrew H. Wiser, Zev N. Kronenberg…·Ivan Liachko

Hi-C contacts assign assembled contigs to the cell they came from: 50 near-complete genomes among 252 clusters from one human fecal sample, plus plasmid-host links.

103 citations

humanmetagenomics

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