Author

Tuscan R. Thompson

University of Washington

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Biochemistry· 1

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:diffusion model· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

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Andrew FavoriD· 1 shared Andrew KubaneyiD· 1 shared Arnav NagleiD· 1 shared Bo QiangiD· 1 shared David A. BakeriD· 1 shared Frank DiMaioiD· 1 shared Ian R. HumphreysiD· 1 shared Jasper ButcheriD· 1 shared

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1 paper

Recent·Most cited

Accelerating Biomolecular Modeling with AtomWorks andRF3

Nathaniel Corley, Simon V. Mathis, Rohith Krishna, Magnus S. Bauer, Tuscan R. Thompson, Woody Ahern, Maxwell W. Kazman, Rafael I. Brent, Kieran Didi, Andrew Kubaney, Ryan McHugh, Arnav Nagle, Andrew Favor, Meghana Kshirsagar, Pascal Sturmfels, , Frank DiMaio

AtomWorks, a modular atom-level data framework, trains structure prediction and design models; the resulting RF3 improves chirality handling and performs between AF3 and Boltz.

bioRxiv · Aug 14, 2025 · PreprintBiochemistry✦ In-depth digest