Author

Y. Sakakibara

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1

Frequent Co-Authors

A. Toyoda· 2 shared E. Sasaki· 2 shared M. Uehara· 2 shared S. Hase· 2 shared T. Inoue· 2 shared M. Kominato· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

A. Toyoda

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine

M. Uehara, T. Inoue, S. Hase, E. Sasaki, A. Toyoda, Y. Sakakibara

This study identifies gene modules from host-microbiome co-expression networks in marmoset intestines, revealing spatially varying interactions and new bacterial genes mediating host-microbiome relationships.

mSystems · May 16, 2024Peer-reviewedMicrobiology

Development of a metatranscriptomic analysis method for multiple intestinal sites and its application to the common marmoset intestine

M. Uehara, T. Inoue, M. Kominato, S. Hase, E. Sasaki, A. Toyoda, Y. Sakakibara

The paper develops a metatranscriptomic analysis method integrating metagenome and metatranscriptome to study functional changes in the microbiome across intestinal sites in common marmosets, revealing dynamic gene expression patterns.

bioRxiv · Oct 12, 2021 · PreprintMicrobiology