Author

Yann Rodriguez

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Organism:human· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

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Almudena Espín-PéreziD· 1 shared Jean‐Philippe VertiD· 1 shared Khalil Ouardini· 1 shared Simon GrouardiD· 1 shared

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2025-2025 · peak 1/yr

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1 shared paperBioinformatics

Almudena Espín-PérezORCID

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1 paper

Recent·Most cited

Joint probabilistic modeling of pseudobulk and single-cell transcriptomics enables accurate estimation of cell type composition

Simon Grouard, Khalil Ouardini, Yann Rodriguez, Jean‐Philippe Vert, Almudena Espín-Pérez

The paper introduces MixupVI, a deep generative model for reference-free deconvolution of bulk RNA-seq data using single-cell transcriptomics, and releases PyDeconv for benchmarking deconvolution algorithms.

bioRxiv · May 28, 2025 · PreprintBioinformatics