Author

Yingyin Cheng

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Organism:zebrafish· 3 Research Focus:database / resource· 2 Approach:deep learning· 2 Assay:imaging· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Mijuan ShiiD· 4 shared Wanting ZhangiD· 4 shared Xiao-Qin XiaiD· 4 shared Cheng Guo· 3 shared Danying Cao· 2 shared Heng Li· 1 shared Hong Yul Yang· 1 shared Keyi Ren· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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4 shared papersBioinformatics

Mijuan ShiORCID

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4 papers

Recent·Most cited

Longitudinal Identification of Zebrafish Individuals by Deep Learning

Danying Cao, Cheng Guo, Yingyin Cheng, Wanting Zhang, Mijuan Shi, Xiao-Qin Xia

This paper develops ESC-IDNet, a deep learning model for longitudinal zebrafish individual identification, achieving high accuracy with minimal updates.

bioRxiv · Dec 16, 2025 · PreprintBioinformatics

A real-time detection and non-destructive warning method for zebrafish body surface anomalies based on improved YOLOv8 framework

Danying Cao, Yang Hong, Cheng Guo, Yingyin Cheng, Wanting Zhang, Mijuan Shi, Xiao-Qin Xia

This paper introduces ESC-YOLOv8-seg, a real-time, non-destructive method for detecting zebrafish surface anomalies with high accuracy and speed.

bioRxiv · Apr 28, 2025 · PreprintBioinformatics

FishCODE: a web-based information platform for comprehensive omics data exploration in fish research

Heng Li, Wanting Zhang, Keyi Ren, Hong Yul Yang, Lei Zhang, Waqar Younas, Yingyin Cheng, Yaping Wang, Mijuan Shi, Xiao-Qin Xia

FishCODE provides a comprehensive multi-omics platform for fish research, offering extensive datasets and annotations to enhance data exploration and analysis.

Journal of genetics and genomics/Journal of Genetics and Genomics · Oct 9, 2024Peer-reviewedBioinformatics

FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome

Cheng Guo, Weidong Ye, Mijuan Shi, You Duan, Wanting Zhang, Yingyin Cheng, Xiao-Qin Xia

FishSCT provides a zebrafish-focused database with single-cell transcriptome data from zebrafish and 8 other fish species, offering marker genes and expression profiles for 245 cell types.

Science China Life Sciences · Mar 22, 2023Peer-reviewedBioinformatics