Author

Yukun Zhang

Shanghai Jiao Tong UniversityPrimary ORCID profile (0000-0003-4487-9988 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Yukun ZhangiD1 paper · Beijing University of Chinese Medicine

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Bozitao ZhongiD· 1 shared Fan JiangiD· 1 shared Liang HongiD· 1 shared Liang ZhangiD· 1 shared Mingchen LiiD· 1 shared Xiaoran Cheng· 1 shared Yang TaniD· 1 shared Yuanxi YuiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Bozitao ZhongORCID

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1 paper

Recent·Most cited

VenusGenome: Genome-Aware Masked Autoencoding for Microbial Genome Representation Learning

Liang Zhang, Yukun Zhang, Yang Tan, Fan Jiang, Bozitao Zhong, Xiaoran Cheng, Liang Hong, Mingchen Li, Yuanxi Yu

VenusGenome improves microbial genome representation learning by using a genome-aware masked autoencoder, achieving high performance in phenotype prediction and gene-level tasks.

bioRxiv · Oct 27, 2026 · PreprintBioinformatics