Benchmarking Alignment Strategies for Hi-C Reads in Metagenomic Hi-C Data
Yuqiu Wang, Wenxuan Zuo, Jiawei Huang, Fengzhu Sun, Yuxuan Du
The paper benchmarks alignment strategies for Hi-C reads in metagenomic data, finding BWA MEM -5SP performs best in inter-contig read pairs and binning quality.
Genome biology · Jan 30, 2026Peer-reviewedBioinformatics