Author

Yuta Hasebe

Kanagawa Environmental Research Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Keiichi FukayaiD· 1 shared Masaki TakenakaiD· 1 shared Shonosuke ShigetaiD· 1 shared Takumi Yshida· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 3 mutual co-author links

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1 shared paperEcology

Keiichi FukayaORCID

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2 papers

Recent·Most cited

Phylo-MIP: Phylogeny-based Molecular Identification Pipeline for DNA metabarcoding, and assessment of insect communities in subalpine river ecosystems

Takumi Yshida, Shonosuke Shigeta, Yuta Hasebe, Masaki Takenaka

Phylo-MIP improves species identification in eDNA metabarcoding by integrating phylogenetic analysis, increasing detected species by 28% over BLAST-based methods.

bioRxiv · Nov 10, 2025 · PreprintMolecular Biology

occumb: An R package for site occupancy modeling of eDNA metabarcoding data

Keiichi Fukaya, Yuta Hasebe

The paper introduces the occumb R package for site occupancy modeling of eDNA metabarcoding data, emphasizing the importance of accounting for false negatives in species detection.

Population Ecology · Jun 23, 2025Peer-reviewedEcology