Benchmarking MSA pairing for protein-protein complex structure prediction reveals a depth-over-pairing principle
Yuxian Luo, Wenkai Wang, Zhenling Peng, Jianyi Yang
The paper benchmarks MSA pairing strategies for protein-protein complex structure prediction and finds that increased MSA depth, not specific pairing, improves accuracy.
bioRxiv · Apr 15, 2026 · PreprintBioinformatics