Author

Zain M.Patel

Broad Institute

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Bioinformatics· 1

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

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Dongyuan SongiD· 1 shared Guanao YaniD· 1 shared Jingyi Jessica LiiD· 1 shared Luca PinelloiD· 1 shared Zhijian LiiD· 1 shared

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2023-2023 · peak 1/yr

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Dongyuan SongORCID

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1 paper

Recent·Most cited

Benchmarking computational methods to identify spatially variable genes and peaks

Zhijian Li, Zain M.Patel, Dongyuan Song, Guanao Yan, Jingyi Jessica Li, Luca Pinello

This study benchmarks 14 computational methods for identifying spatially variable genes and peaks using simulated and real-world spatial transcriptomics and ATAC-seq data, finding spatialDE2 performs best and highlighting the need for specialized algorithms for peaks.

bioRxiv · Dec 2, 2023 · PreprintBioinformatics