From Circles to Signals: Representation Learning on Ultra-Long Extrachromosomal Circular DNA
Jien Li, Zhenke Liu, Ziqi Zhang, Jiaqi Zhang, Ritambhara Singh
The paper introduces eccDNAMamba, a model for ultra-long eccDNA sequences, showing improved performance in cancer discrimination and copy-number prediction.
bioRxiv · Nov 22, 2025 · PreprintBioinformatics