Author

Shakil Ahmed

Aarhus UniversityORCID 0000-0001-6366-4881Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Shakil Ahmed1 paper · University of Louisville;

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:imaging· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Christian N. S. PederseniD· 1 shared Kim BjergeiD· 1 shared Toke T. HøyeiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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1 shared paperEcology

Christian N. S. PedersenORCID

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1 paper

Recent·Most cited

BioCluster: Clustering and Zero-Shot Labeling of Ecological Images Using Foundation Models

Shakil Ahmed, Kim Bjerge, Toke T. Høye, Christian N. S. Pedersen

BioCluster uses foundation models to cluster and zero-shot label ecological images, achieving 84% and 83% species-level accuracy on moth and bird datasets.

bioRxiv · Oct 22, 2026 · PreprintEcology