Author

Yan Duan

ORCID 0000-0001-7129-506XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Research Focus:sequence-to-function modeling· 1 Approach:statistical model· 1

Frequent Co-Authors

John CannyiD· 1 shared Neil ThomasiD· 1 shared Nicholas BhattacharyaiD· 1 shared Pieter AbbeeliD· 1 shared Roshan RaoiD· 1 shared Xi CheniD· 1 shared Yun S. SongiD· 1 shared

Activity by Year

2019-2019 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperSynthetic Biology

John CannyORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Synthetic BiologybioRxivPreprintJun 20, 2019

✦ In-depth digest

Evaluating Protein Transfer Learning with TAPE

Roshan Rao, Nicholas Bhattacharya, Neil Thomas…·Yun S. Song

Across five protein tasks with evolution-aware splits, self-supervised pretraining helped nearly every model on every task, yet alignment-based features still beat learned embeddings on secondary structure and contact prediction.

719 citations

protein sequenceprotein structure

𝕏 PostBluesky