Author

S. Mazdak Abulnaga

Harvard UniversityORCID 0000-0001-7902-3640Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:graph neural network· 1 Research Focus:protein design· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Aiden R. KolodziejiD· 1 shared Sergey OvchinnikoviD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperBiophysics

Aiden R. KolodziejORCID

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1 paper

Recent·Most cited

CIRPIN: Learning Circular Permutation-Invariant Representations to Uncover Putative Protein Homologs

Aiden R. Kolodziej, S. Mazdak Abulnaga, Sergey Ovchinnikov

CIRPIN identifies protein homologs related by circular permutation using a permutation-invariant graph neural network, uncovering thousands of novel pairs and revealing natural PDZ domain permutations.

bioRxiv · Nov 18, 2025 · PreprintBiophysics