Author

Petra Choi

Virginia TechORCID 0000-0001-8392-189XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:variant effect prediction· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Haoqiu SongiD· 1 shared Liqing ZhangiD· 1 shared Sajib Acharjee DipiD· 1 shared Tran Chau· 1 shared Uddip Acharjee ShuvoiD· 1 shared Xuan WangiD· 1 shared

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2024-2024 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Haoqiu SongORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJun 18, 2024

PathoLM: Identifying pathogenicity from the DNA sequence through the Genome Foundation Model

Sajib Acharjee Dip, Uddip Acharjee Shuvo, Tran Chau…·Liqing Zhang

PathoLM is a pathogen language model that improves pathogenicity identification in bacterial and viral sequences by leveraging pre-trained DNA models and minimal data, outperforming existing methods.

8 citations

bacteria (other)virus

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