Author

Hereroa T. Johnston

Centre National de la Recherche ScientifiqueORCID 0000-0001-8477-596XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:gene regulatory network inference· 2 Research Focus:differential expression· 1 Organism:mouse· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aldine AmieliD· 2 shared Éric RöttingeriD· 2 shared Jacob F. WarneriD· 2 shared Carl Whitesel· 1 shared Deirdre C. LyonsiD· 1 shared Grant O. BatzeliD· 1 shared Jessica A. GoodheartiD· 1 shared Karine NedoncelleiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersDevelopmental Biology

Aldine AmielORCID

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3 papers

Recent·Most cited

A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes

Jessica A. Goodheart, Robin A. Rio, Neville F. Taraporevala, Rose A. Fiorenza, Seth R. Barnes, Kevin Morrill, Mark Allan C. Jacob, Carl Whitesel, Park Masterson, Grant O. Batzel, Hereroa T. Johnston, M. Desmond Ramirez, Paul S. Katz, Deirdre C. Lyons

The paper constructs a chromosome-level genome for Berghia stephanieae to study clade-specific gene expression in novel and conserved tissues, finding no clear trend between clade-specific gene proportion and tissue novelty.

bioRxiv · Aug 4, 2023 · PreprintGenomics

Whole body regeneration deploys a rewired embryonic gene regulatory network logic

Jacob F. Warner, Aldine Amiel, Hereroa T. Johnston, Éric Röttinger

The paper compares embryonic and regeneration gene regulatory networks in Nematostella vectensis, showing regeneration reuses embryonic modules with specific network logic and identifies apoptosis as a regeneration-specific event.

bioRxiv · Jul 26, 2021 · PreprintDevelopmental Biology

NvERTx: A gene expression database to compare Embryogenesis and Regeneration in the sea anemone Nematostella vectensis

Jacob F. Warner, Vincent Guerlais, Aldine Amiel, Hereroa T. Johnston, Karine Nedoncelle, Éric Röttinger

NvERTx provides a gene expression database comparing embryogenesis and regeneration in Nematostella vectensis using RNA-seq data.

Development · May 8, 2018Peer-reviewedDevelopmental Biology