Jonathan Klawitter

Full-Support Conditional Clade Distribution for Bayesian Tree Topology Testing

This paper introduces KRegCCD, a new Bayesian phylogenetic model that improves posterior tree estimation and enables topology testing by providing full support over tree space.

Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities

This paper introduces a Bayesian method for summarizing phylogenetic tree posteriors using clade probabilities, showing it performs as well or better than existing methods.

Skeletons in the Forest: Using Entropy-Based Rogue Detection on Bayesian Phylogenetic Tree Distributions

The paper introduces entropy-based rogue detection algorithms to improve Bayesian phylogenetic analysis by identifying and removing rogue taxa and clades that distort tree distributions.