Author

A. V. Smirnova

Evogene (Israel)ORCID 0000-0001-9030-3192Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:human· 1

Frequent Co-Authors

Eugene A AlbertiD· 2 shared Mary V. WoroncowiD· 2 shared Andrei A. DeviatkiniD· 1 shared Arina KopernikiD· 1 shared Daria Molodtsova-ZolotukhinaiD· 1 shared DI Smirnova· 1 shared Elizaveta BondarchukiD· 1 shared Gaukhar Zobkova· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Eugene A AlbertORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Systematic search for new HLA alleles in 4195 human 30x WGS samples

EA Albert, Andrei A. Deviatkin, DI Smirnova, Mary V. Woroncow, Gaukhar Zobkova, A. V. Smirnova, PY Volchkov

The paper introduces HLAchecker, a pipeline to identify new HLA alleles from WGS data by comparing predicted HLA types with raw data, and validates 17 potential new alleles.

bioRxiv · May 31, 2024 · PreprintBioinformatics

Sanger validation of WGS variants - when to?

Arina Kopernik, Г.Ю. Зобкова, Natalia Doroschuk, Anna Smirnova, Daria Molodtsova-Zolotukhina, Olesya V. Sagaydak, О. П. Рыжкова, Sergey Ivanovich Kutsev, Olga S. Groznova, L. P. Melikyan, Elizaveta Bondarchuk, Mary V. Woroncow, Eugene A Albert, Viktor P. Bogdanov, Pavel Volchkov

This study evaluates concordance between whole genome sequencing variants and Sanger validation to establish thresholds for high-quality variant filtering.

bioRxiv · Apr 19, 2024 · PreprintGenomics