Nasim Safaei

Metax improves cross-domain taxonomic profiling by using coverage-informed probabilistic modeling, showing accuracy across bacteria, archaea, eukaryotes, and viruses in diverse samples.

This study evaluates LLMs for microbial phenotype annotation, finding varied performance across models and traits, with confidence scores correlating with accuracy.

This study uses long-read metagenomics to detect Paracoccus yeei in SBP patients, revealing its pathogenicity and antimicrobial resistance profile.