Author

Nimalan Arinaminpathy

Imperial College LondonORCID 0000-0001-9502-6876Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Approach:graph neural network· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ajit LalvaniiD· 2 shared John A. LeesiD· 2 shared Leonid ChindelevitchiD· 2 shared Romain DerelleiD· 2 shared Bhavin VaderaiD· 1 shared Devesh Gupta· 1 shared Jody Emile PhelaniD· 1 shared Joel HellewelliD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Ajit LalvaniORCID

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3 papers

Recent·Most cited

Reference-free variant calling with local graph construction with ska lo (SKA)

Romain Derelle, Kieran J. Madon, Joel Hellewell, Víctor Rodríguez-Bouza, Nimalan Arinaminpathy, Ajit Lalvani, Nicholas J. Croucher, Simon R. Harris, John A. Lees, Leonid Chindelevitch

This paper introduces ska lo, a reference-free variant calling tool that uses a coloured De Bruijn graph to detect SNPs, insertions, deletions, and recombination events in pathogen genomes.

Molecular Biology and Evolution · Apr 1, 2025Peer-reviewedBioinformatics

fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing

Romain Derelle, John A. Lees, Jody Emile Phelan, Ajit Lalvani, Nimalan Arinaminpathy, Leonid Chindelevitch

fastlin rapidly and accurately types Mycobacterium tuberculosis complex lineages from sequencing data, detecting mixed-lineage strains and estimating proportions.

Bioinformatics · Oct 23, 2023Peer-reviewedBioinformatics

Delays, behaviour and transmission: modelling the impact of effective private provider engagement on tuberculosis control in urban India

Nimalan Arinaminpathy, Sarang Deo, Simrita Singh, Sunil Khaparde, Raghuram Rao, Bhavin Vadera, Niraj Kulshrestha, Devesh Gupta, Kiran Rade, Sreenivas Achuthan Nair, Puneet Kumar Dewan

This study models how engaging private healthcare providers in tuberculosis control can reduce incidence and mortality in urban India when scaled to 75% of patient-provider interactions.

Scientific Reports · Mar 7, 2019Peer-reviewedSystems Biology