BioinformaticsbioRxivPreprint
An Experiment in Learning the Language of Sequence Motifs: Sequence Logos vs. Finite-State Machines
Alexandre P. Francisco, Travis Gagie, Dominik Kempa…·Esko Ukkonen
The paper compares finite-state machines and position weight matrices for modeling sequence motifs, finding FSMs provide better discrimination of positive and negative sequences.
DOI 10.1101/143024