Author

Ayush Varshney

California Institute of TechnologyORCID 0000-0002-0301-9319Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Approach:diffusion model· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

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David Van ValeniD· 1 shared Evan Zhang· 1 shared Rohit DilipiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioengineering

David Van ValenORCID

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1 paper

Recent·Most cited

BioengineeringbioRxivPreprintOct 1, 2025

Flow Autoencoders are Effective Protein Tokenizers

Rohit Dilip, Evan Zhang, Ayush Varshney, David Van Valen

The paper introduces Kanzi, a flow-based tokenizer for protein structures that simplifies training and outperforms existing tokenizers on reconstruction metrics.

DOI 10.1101/2025.10.01.679645

protein structuredeep learning