Author

Niladri Patra

Indian Institute of Technology DhanbadORCID 0000-0002-0331-2670Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 2 Approach:statistical model· 2 Approach:deep learning· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Assay:structural biology· 1

Frequent Co-Authors

Abhishek BeraiD· 1 shared Anupam BandyopadhyayiD· 1 shared Arnab Chowdhary· 1 shared Diship SrivastavaiD· 1 shared Gourav ChakrabortyiD· 1 shared Kunal DhankhariD· 1 shared Narayan Chandra MishraiD· 1 shared S. MukherjeeiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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1 shared paperBiochemistry

Abhishek BeraORCID

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2 papers

Recent·Most cited

Estimation of Absolute Protein-DNA Binding Free Energy using Streamlined Geometric Formalism

S. Mukherjee, Diship Srivastava, Niladri Patra

The paper estimates absolute protein-DNA binding free energy using a streamlined geometric formalism with high accuracy and low computational cost.

The Journal of Physical Chemistry Letters · Jul 11, 2026Peer-reviewedBiophysics

Structural insights into the mechanism of C3 side chain fragmentation in cephalosporins with SME-1 class A carbapenemase

Kunal Dhankhar, Gourav Chakraborty, Abhishek Bera, Arnab Chowdhary, Anupam Bandyopadhyay, Narayan Chandra Mishra, Niladri Patra, Saugata Hazra

This study investigates the mechanism of C3 side chain fragmentation in cephalosporins by SME-1 class A carbapenemase using crystallography and QM/MM simulations, revealing that sp3 hybridization at C3 facilitates fragmentation while sp2 and sulfur at C3 inhibit it.

bioRxiv · Jul 17, 2025 · PreprintBiochemistry