Author

Junghoon Chae

Oak Ridge National LaboratoryORCID 0000-0002-0601-6746Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Arvind RamanathaniD· 1 shared Chad A. SteediD· 1 shared David HeiseiD· 1 shared Debsindhu BhowmikiD· 1 shared Francesca FontiniD· 1 shared Heng MaiD· 1 shared Jacqueline P. HonerlawiD· 1 shared Keith Connatser· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Arvind RamanathanORCID

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2 papers

Recent·Most cited

Detecting Manuscripts Related to Computable Phenotypes Using a Transformer-based Language Model

Junghoon Chae, David Heise, Keith Connatser, Jacqueline P. Honerlaw, Monika Maripuri, Yuk-Lam Anne Ho, Francesca Fontin, Vidisha Tanukonda, Kelly Cho

The paper introduces a transformer-based language model to identify computable phenotype definitions in biomedical literature and integrates it into a platform for literature curation.

bioRxiv · Mar 16, 2026 · PreprintBioinformatics

Visual Analytics for Deep Embeddings of Large Scale Molecular Dynamics Simulations

Junghoon Chae, Debsindhu Bhowmik, Heng Ma, Arvind Ramanathan, Chad A. Steed

The paper develops an interactive visual analytics system to evaluate and analyze deep embeddings of large-scale molecular dynamics simulations.

IEEE International Conference on Big Data (BigData) · Dec 1, 2019Peer-reviewedBioinformatics