Lourdes Peña‐Castillo

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

OpDetect uses RNA-seq data and deep learning to detect operons across bacterial and eukaryotic species with improved accuracy compared to existing methods.

BacTermFinder: A Comprehensive and General Bacterial Terminator Finder using a CNN Ensemble

BacTermFinder is a bacterial terminator predictor using an ensemble of CNNs, outperforming existing tools across multiple species and terminator types.

sRNARFTarget: A fast machine-learning-based approach for transcriptome-wide sRNA Target Prediction

sRNARFTarget is a machine-learning method for transcriptome-wide sRNA target prediction, outperforming IntaRNA in speed and accuracy for species-specific sRNAs but not CopraRNA in overall accuracy.

Promotech: A general tool for bacterial promoter recognition

Promotech is a machine-learning tool for bacterial promoter recognition that outperforms existing methods across multiple species.

Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi

This study presents the first metagenomic analysis of a bivalve symbiont, revealing its broad metabolic potential and genomic features.