Author

Daniel P. Cooke

University of OxfordORCID 0000-0002-0765-1557Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Organism:human· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1

Frequent Co-Authors

David C. WedgeiD· 2 shared Gerton A. LunteriD· 2 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

David C. WedgeORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Benchmarking small-variant genotyping in polyploids

Daniel P. Cooke, David C. Wedge, Gerton A. Lunter

The paper benchmarks small-variant genotyping in polyploids using Octopus and other tools on synthetic and real datasets, finding Octopus has 25% fewer errors on average.

Genome Research · Feb 1, 2022Peer-reviewedBioinformatics

A unified haplotype-based method for accurate and comprehensive variant calling

Daniel P. Cooke, David C. Wedge, Gerton A. Lunter

Octopus is a haplotype-based variant caller that accurately detects germline and somatic variants in diverse scenarios, including tumours and parent-offspring trios.

Nature Biotechnology · Mar 29, 2021Peer-reviewedBioinformatics