Author

Patrick van Zalm

Boston Children's HospitalORCID 0000-0002-0806-3685Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:metagenomics· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Bernhard Y. RenardiD· 1 shared Hanno SteeniD· 1 shared Thilo MuthiD· 1 shared Tom AltenburgiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Bernhard Y. RenardORCID

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1 paper

Recent·Most cited

Foundation Model Enables Interpretable Open and Error-Tolerant Searching for Mass Spectrometry-Based Proteomics

Tom Altenburg, Thilo Muth, Patrick van Zalm, Hanno Steen, Bernhard Y. Renard

The paper introduces yHydra, a foundation model for mass spectrometry-based proteomics that enables open and error-tolerant peptide and protein identification with improved performance.

Bioinformatics · Jul 1, 2026Peer-reviewedBioinformatics