Author

Samantha Chen

University of California San DiegoORCID 0000-0002-0883-5569Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

David R. HaynoriD· 1 shared Kyle J. TravagliniiD· 1 shared Lucas MageeiD· 1 shared Michael HawrylycziD· 1 shared Partha P. MitraiD· 1 shared Rohan GalaiD· 1 shared Tristan Brugère· 1 shared Uygar SümbüliD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperNeuroscience

David R. HaynorORCID

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1 paper

Recent·Most cited

Discrete Morse Graph Construction for High-Dimensional Transcriptomic Data

Lucas Magee, Rohan Gala, Kyle J. Travaglini, Uygar Sümbül, David R. Haynor, Samantha Chen, Tristan Brugère, Yusu Wang, Partha P. Mitra, Michael Hawrylycz

This paper introduces scDMGC, a method to analyze high-dimensional transcriptomic data using topological data analysis, revealing cell-type organization and transcriptional gradients in brain datasets.

bioRxiv · Sep 28, 2026 · PreprintNeuroscience