Author

Charilaos I. Kanatsoulis

Stanford UniversityORCID 0000-0002-0952-1561Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Research Focus:perturbation response prediction· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Andrea CalifanoiD· 1 shared Evan PaulliD· 1 shared Léo Dupire· 1 shared Mingxuan ZhangiD· 1 shared Mohammed AlQuraishiiD· 1 shared Rowan Cassius· 1 shared Theofanis KaraletsosiD· 1 shared Vinay S. SwamyiD· 1 shared

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2025-2025 · peak 1/yr

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8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Andrea CalifanoORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJul 3, 2025

GREmLN: A Cellular Graph Structure Aware Transcriptomics Foundation Model

Mingxuan Zhang, Vinay S. Swamy, Rowan Cassius…·Andrea Califano

GREmLN is a foundation model that uses graph structure to improve gene embeddings in single-cell transcriptomics, outperforming baselines in cell type annotation and perturbation prediction.

6 citations

scRNA-seqgraph neural network