Molecular BiologybioRxivPreprint
Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user's perspective
Alejandro Fernández-Vega, Federica Farabegoli, María M. Alonso-Martínez, Ignacio Ortea
The paper compares proteomics analysis workflows for diaPASEF data using FragPipe, DIA-NN, and Spectronaut, showing library-free methods now perform as well as library-based ones.
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