Author

Rodrigo Silva Meneses

University Medical Center UtrechtORCID 0000-0002-1632-1752Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Organism:E. coli· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Anita C. SchürchiD· 2 shared Jesse J. KerkvlietiD· 2 shared Julián PaganiniiD· 2 shared Nienke L. PlantingaiD· 2 shared Rob J. L. WillemsiD· 2 shared Sergio Arredondo-AlonsoiD· 2 shared Gijs TeunisiD· 1 shared Jukka CoranderiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Anita C. SchürchORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 28, 2024

gplasCC: classification and reconstruction of plasmids from short-read sequencing data for any bacterial species

Julián Paganini, Jesse J. Kerkvliet, Gijs Teunis…·Anita C. Schürch

gplasCC classifies and reconstructs plasmids from short-read sequencing data across multiple bacterial species using simplified plasmidEC and species-specific databases.

3 citations

bacteria (other)whole-genome sequencing

BioinformaticsbioRxivPreprintAug 31, 2023

PlasmidEC and gplas2: An optimised short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli

Julián Paganini, Jesse J. Kerkvliet, Lisa Vader…·Anita C. Schürch

This paper introduces plasmidEC and gplas2 to accurately predict and reconstruct antibiotic resistance plasmids in E. coli using short-read sequencing data, outperforming existing methods.

DOI 10.1101/2023.08.31.555679

E. colibulk RNA-seq