Tanguy Marchand

BOTANIC-0: a series of foundation models for plant genomic data

BOTANIC-0 models are plant genomic foundation models pretrained on diverse plant genomes, achieving competitive performance in genomic tasks like variant effect prediction.

FedPyDESeq2: a federated framework for bulk RNA-seq differential expression analysis

FedPyDESeq2 enables privacy-preserving differential expression analysis on siloed bulk RNA-seq data, achieving results comparable to pooled data analysis and outperforming meta-analysis approaches.