Kaiwen Wang

BiGER: Bayesian Rank Aggregation in Genomics with Extended Ranking Schemes

BiGER is a Bayesian rank aggregation method for meta-analysis of gene lists, handling mixed rankings and missing data with high accuracy.

Unified Probabilistic Analysis of CyTOF: A Deep Generative Approach using CytoOne

CytoOne is a probabilistic framework for CyTOF data that integrates batch correction, differential analysis, and visualization, effectively modeling sparse and noisy data.

Cmai: Predicting Antigen-Antibody Interactions from Massive Sequencing Data

Cmai predicts antigen-antibody interactions from high-throughput BCR sequencing data, revealing immune responses to tumor antigens and ICI treatment outcomes.

Cytomulate: accurate and efficient simulation of CyTOF data

Cytomulate simulates CyTOF data accurately and efficiently, outperforming existing methods in capturing data characteristics and learning distributions.

Comparative Analysis of Dimension Reduction Methods for Cytometry by Time-of-Flight Data

This paper benchmarks 21 dimension reduction methods on CyTOF data, finding SAUCIE, SQuaD-MDS, and scvis as top performers with different strengths.