Comparison Between UMAP and t-SNE for Multiplex-Immunofluorescence Derived Single-Cell Data from Tissue Sections
Duoduo Wu, Joe Yeong Poh Sheng, Grace Tan Su-En, Marion Chevrier, Josh Loh Jie Hua, Tony Lim Kiat Hon, Jinmiao Chen
The paper compares UMAP and t-SNE for analyzing multiplex-immunofluorescence single-cell data from HCC tissues, finding UMAP faster and better at highlighting biological lineages like hybrid tumor cells.
bioRxiv · Feb 15, 2019 · PreprintBioinformatics