Author

David James Sherman

Institut national de recherche en sciences et technologies du numériqueORCID 0000-0002-2316-1005Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1

Frequent Co-Authors

Clémence FriouxiD· 2 shared Alain FranciD· 1 shared Arthur PéréiD· 1 shared Carole BelliardoiD· 1 shared Claire LemaitreiD· 1 shared Elodie BelmonteiD· 1 shared Étienne DanchiniD· 1 shared Franck SaliniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Clémence FriouxORCID

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2 papers

Recent·Most cited

GenomicsEnvironmental MicrobiomePeer-reviewedSep 2, 2026

Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics

Carole Belliardo, Nicolas Maurice, Arthur Péré…·Étienne Danchin

This study combines HiFi long-read and short-read sequencing to improve MAG recovery and binning accuracy in soil microbiomes.

2 citations

metagenomicslong-read sequencing

BioinformaticsbioRxivPreprintMay 5, 2023

A digital twin of bacterial metabolism during cheese production

Maxime Lecomte, Wenfan Cao, Julie Aubert…·Simon Labarthe

This paper models the metabolism of a three-species bacterial community during cheese production using genome-scale models and omics data integration, accurately predicting community dynamics and interactions.

5 citations

bacteria (other)metagenomics