Predicting clonal mutations from tumour spatial transcriptomics data using a graph convolutional neural network
Tom Luijts, Sofie Hoogstoel, Song Wen, E. Pappaert, Ellen De Meester, Evelien Van Hamme, Sofie De Schepper, Wouter Willaert, Anne Vral, Isabelle Hoorens, Jimmy Van den Eynden
This paper introduces SPOT-Mut, a graph convolutional neural network that predicts clonal mutations from spatial transcriptomics data, achieving high precision and recall for key driver genes.
bioRxiv · Oct 28, 2026 · PreprintCancer Biology