Author

Johanna Krueger

Universitat Pompeu FabraORCID 0000-0002-2685-718XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:machine learning (classical)· 1 Organism:non-human primate· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Esther LizanoiD· 2 shared Guillermo Carrillo-MartiniD· 2 shared Tomàs Marquès‐BonetiD· 2 shared David JuaniD· 1 shared David M. AlbaiD· 1 shared Enrico CappelliniiD· 1 shared Harvinder PawariD· 1 shared Joanna L. KelleyiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Esther LizanoORCID

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2 papers

Recent·Most cited

ProteoParc: A tool to generate protein reference databases for ancient and non-model organisms

Guillermo Carrillo-Martin, Johanna Krueger, Tomàs Marquès‐Bonet, Esther Lizano

ProteoParc generates custom protein reference databases for ancient and non-model organisms to improve peptide identification and ZooMS marker annotation in proteomics studies.

Journal of Proteome Research · Aug 5, 2026Peer-reviewedBioinformatics

Phylogenetic signal in primate tooth enamel proteins and its relevance for paleoproteomics

Ricardo Fong-Zazueta, Johanna Krueger, David M. Alba, Xènia Aymerich, Robin M. D. Beck, Enrico Cappellini, Guillermo Carrillo-Martin, Omar Cirilli, Nathan L Clark, Omar E. Cornejo, Kyle Kai‐How Farh, Luis Ferrández-Peral, David Juan, Joanna L. Kelley, Lukas F. K. Kuderna, , Esther Lizano

The paper evaluates the reliability of phylogenetic inference using primate enamel proteins by simulating sequence fragmentation and comparing results to a reference species tree.

Genome Biology and Evolution · Jan 21, 2025Peer-reviewedEvolutionary Biology