Karam B. Singh

The fungal pathogen Rhizoctonia solani AG-8 has two nuclear haplotypes that differ in abundance

This study reveals that Rhizoctonia solani AG-8 has two nuclear haplotypes with differing abundances and gene expression patterns during plant infection.

Transcription factor lineages in plant-pathogenic fungi, connecting diversity with fungal virulence

This study analyzes transcription factor diversity across plant-pathogenic fungi to understand its relationship with virulence.

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that direct genome-wide DNA methylation

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

EffectorP 2.0 improves fungal effector protein prediction with higher accuracy and reduced false positives compared to previous versions.

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning

ApolystP predicts apoplastic localization of plant proteins and effectors using machine learning, achieving high sensitivity and low false positive rate.

LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell

LOCALIZER predicts subcellular localization of plant and effector proteins, showing improved accuracy for chloroplast and mitochondrial targeting and identifying a new chloroplast transit peptide in ToxA.