Author

Matthias Blanke

University of GöttingenORCID 0000-0002-2839-8634Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Burkhard MorgensterniD· 1 shared Julia SchirmacheriD· 1 shared Nicolina Leppich· 1 shared Niklas BirthiD· 1 shared Nina Andreae· 1 shared Peter MeinickeiD· 1 shared Rasmus Steinkamp· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Burkhard MorgensternORCID

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2 papers

Recent·Most cited

CoCoPyE: feature engineering for learning and prediction of genome quality indices

Niklas Birth, Nicolina Leppich, Julia Schirmacher, Nina Andreae, Rasmus Steinkamp, Matthias Blanke, Peter Meinicke

CoCoPyE improves the prediction of genome quality indices by using a two-stage feature extraction and machine learning approach, outperforming existing tools in simulations.

GigaScience · Jan 1, 2024Peer-reviewedBioinformatics

Phylogenetic placement of short reads without sequence alignment

Matthias Blanke, Burkhard Morgenstern

This paper introduces App-SpaM, an alignment-free method for phylogenetic placement of short reads, achieving comparable accuracy to alignment-based methods but with significantly faster performance.

bioRxiv · Oct 19, 2020 · PreprintBioinformatics