Author

Tommaso Mario Buonocore

University of PaviaORCID 0000-0002-2887-088XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Approach:machine learning (classical)· 1 Organism:multiple species· 1

Frequent Co-Authors

Enea ParimbelliiD· 2 shared Giovanna NicoraiD· 2 shared Laura BergomiiD· 2 shared Marco SalemiiD· 2 shared Mattia ProsperiiD· 2 shared Riccardo BellazziiD· 2 shared Simone MariniiD· 2 shared Simone RancatiiD· 2 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Enea ParimbelliORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Vir2vec: A Genome-Wide Viral Embedding

Simone Rancati, Pablo Arozarena Donelli, Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Michael Aaron Sy, Sakshi Pandey, Mattia Prosperi, Marco Salemi, Riccardo Bellazzi, Christina A. Boucher, Enea Parimbelli, Simone Marini

Vir2vec is a genome-wide viral embedding model that outperforms existing models in viral genome understanding tasks and provides explainability for host adaptation mutations.

bioRxiv · Sep 24, 2026 · PreprintBioinformatics

SARITA: A Large Language Model for Generating the S1 Subunit of the SARS-CoV-2 Spike Protein

Simone Rancati, Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Daniel M. Czyż, Enea Parimbelli, Riccardo Bellazzi, Marco Salemi, Mattia Prosperi, Simone Marini

SARITA is a large language model that generates synthetic SARS-CoV-2 Spike S1 sequences, accurately predicting mutations in future variants like Delta and Omicron.

Briefings in Bioinformatics · Jul 1, 2025Peer-reviewedBioinformatics