Author

Jeffrey D. Silberman

Czech Academy of SciencesORCID 0000-0002-2965-9197Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Alastair G. B. SimpsoniD· 1 shared Alexander K. TiceiD· 1 shared Andrew J. RogeriD· 1 shared Courtney W. StairsiD· 1 shared Dayana Elizabeth Salas-LeivaiD· 1 shared Frederick W. SpiegeliD· 1 shared Kevin Regis· 1 shared Matthew W. BrowniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperEvolutionary Biology

Alastair G. B. SimpsonORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

DIVERGENT TRAJECTORIES FOR ANAEROBIC MITOCHONDRIAL EVOLUTION IN BREVIATE PROTISTS

Zhenzhen Yi, Shelby K. Williams, Michelle M. Leger, Nikolaj Brask, Dayana Elizabeth Salas-Leiva, Jeffrey D. Silberman, Yana Eglit, Alastair G. B. Simpson, Andrew J. Roger, Courtney W. Stairs

This study investigates the evolutionary pathways of anaerobic mitochondrial adaptations in breviate protists by analyzing transcriptomes and predicting MRO proteomes across eight species.

bioRxiv · Jan 29, 2026 · PreprintEvolutionary Biology

Validating the genus Pocheina (Acrasidae, Heterolobosea, Excavata) leads to the recognition of three major lineages within Acrasidae

Alexander K. Tice, Kevin Regis, Timothy E. Shutt, Frederick W. Spiegel, Matthew W. Brown, Jeffrey D. Silberman

The paper validates the genus Pocheina by showing that its SSU rRNA sequence was contaminated, leading to the recognition of three major lineages in Acrasidae.

Journal of Eukaryotic Microbiology · Mar 1, 2025Peer-reviewedEvolutionary Biology