Author

Hunter Gaudio

Children's Hospital of PhiladelphiaORCID 0000-0002-3104-8467Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Organism:human· 1 Approach:large language model· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Andrew BlissiD· 1 shared Anne E. GardellaiD· 1 shared Christiana DobrzynskiiD· 1 shared Conor LoyiD· 1 shared Daniel Eweis-LaBolleiD· 1 shared Frank Mi· 1 shared Fuchiang Rich TsuiiD· 1 shared Gerard H. LaurentiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Andrew BlissORCID

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2 papers

Recent·Most cited

Benchmarking large language models for cell-free RNA diagnostic biomarker discovery

Hunter Gaudio, Andrew Bliss, Conor Loy, Daniel Eweis-LaBolle, Anne E. Gardella, Iwijn De Vlaminck

This study benchmarks large language models for disease classification using plasma cell-free RNA profiles, showing their potential in gene-panel design and end-to-end modeling for diagnostics.

Nature Communications · Jun 11, 2026Peer-reviewedBioinformatics

A Template for Translational Bioinformatics: Facilitating Multimodal Data Analyses in Preclinical Models of Neurological Injury

Hunter Gaudio, Viveknarayanan Padmanabhan, William P. Landis, Luiz Eduardo Virgílio Silva, Julia Slovis, Jonathan P. Starr, M. Katie Weeks, Nicholas J. Widmann, Rodrigo M. Menezes Forti, Gerard H. Laurent, Nicolina R. Ranieri, Frank Mi, Rinat E. Degani, Thomas Hallowell, Nile Delso, , Tiffany S. Ko

The paper introduces a data framework for managing multimodal preclinical data in neurological injury research, enabling integration and analysis of diverse data types.

bioRxiv · Jul 17, 2023 · PreprintBioinformatics