Josef Pánek

Integrating suboptimal secondary structures, AI-assisted genomic synteny, and evolutionary conservation to identify bacterial ncRNA homologs beyond sequence similarity

The paper presents a bioinformatic method to identify bacterial ncRNA homologs by integrating structural similarity, genomic synteny, and evolutionary conservation, successfully predicting novel homologs in several species.

An algorithm for template-based prediction of secondary structures of individual RNA sequences

The paper presents a method for predicting RNA secondary structures using templates from other RNA molecules, achieving higher accuracy than existing methods.