Author

Cheng Jin

Hong Kong University of Science and TechnologyORCID 0000-0002-3522-3592Unclaimed ORCID profile · follow to get notified of new preprints

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Cheng Jin1 paper

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Hao CheniD· 2 shared Aaron T. MayeriD· 1 shared Alexandro E. TrevinoiD· 1 shared Can YangiD· 1 shared Danqing ZhuiD· 1 shared Fengtao ZhouiD· 1 shared Jianhua YaoiD· 1 shared Jiarui Ouyang· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Hao ChenORCID

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2 papers

Recent·Most cited

Generalizable virtual staining from histopathology to spatial proteomics across biological scales

Yufan Liu, Oded Falik, Zihan Zhong, Lequan Yu, Ruibang Luo, Cheng Jin, Hao Chen, Aaron T. Mayer, Alexandro E. Trevino, Peter Chou, Yue Dai, Zhenqin Wu

This study introduces QUEST, a model that uses H&E histology to predict spatial protein expression, enabling virtual staining and analysis across biological scales.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Genomic Touchstone: Benchmarking Genomic Language Models in the Context of the Central Dogma

Yihui Wang, Zhiyuan Cai, Qian Zeng, Yihang Gao, Jiarui Ouyang, Yingxue Xu, Shu Yang, Sunan He, Yuxiang Nie, Yu Cai, Fengtao Zhou, Cheng Jin, Xi Wang, Zhi Xie, Danqing Zhu, , Hao Chen

Genomic Touchstone evaluates genomic language models across 36 tasks and 88 datasets, revealing insights on model performance, scaling, and pretraining strategies.

bioRxiv · Jun 25, 2025 · PreprintBioinformatics