Author

Vicente Lopez-Chavarrias

Consejo Superior de Investigaciones CientíficasORCID 0000-0002-3558-9260Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Organism:E. coli· 1 Research Focus:genome assembly· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Aldert ZomeriD· 1 shared Ana AmaroiD· 1 shared Ângela PistaiD· 1 shared Angela van Hoek· 1 shared Arnold KnijniD· 1 shared Brian Byrne· 1 shared Camilla SekseiD· 1 shared Catherine M. BurgessiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Aldert ZomerORCID

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2 papers

Recent·Most cited

'PePApipe': a complete bioinformatics analysis pipeline for African Swine Fever Virus genome

Vicente Lopez-Chavarrias, Irene Aldea, Jovita Fernández-Piñero

PePApipe is a bioinformatics pipeline for ASFV genome analysis that integrates multiple tools into an automated workflow, enabling rapid and reproducible genomic analysis with minimal bioinformatics expertise.

PLoS ONE · Sep 10, 2026Peer-reviewedBioinformatics

Population analysis and host-disease associations of Shiga toxin-producing Escherichia coli from various sources across eleven European countries using whole genome sequencing

Rosangela Tozzoli, Tristan Schadron, Arnold Knijn, Luca De Sabato, Stefano Morabito, Margherita Montalbano Di Filippo, Eve Zeyl Fiskebeck, Gro Skøien Johannessen, Jeevan Karloss Antony Samy, Linnea Good, Robert Söderlund, Angela van Hoek, Lapo Mughini‐Gras, Eelco Franz, Kinga Wieczorek, , Camilla Sekse

This paper analyzes STEC population structure and host-disease associations using whole genome sequencing of 3,418 isolates from 11 European countries, identifying distinct subpopulations linked to disease severity.

bioRxiv · Apr 28, 2026 · PreprintGenomics